I just read Ben's posts a little more thoroughly. I was thinking we were speaking of a running car on the road (Wish I had one of those)
If you have the frame and body seperated for a restoration, and will be rebuilding a motor anyway, I would just plan on doing one motor and doing it right. If you think you might want to make a stroker, do it now, don't spend money twice. Same with tools and equipment like jacks and stuff...If possible buy the good stuff first instean of cheap tools. You will save messing up alot of parts and knuckles. That way the engine can be in the car when you bolt the body back on, and you won't have to remove and install the motor and trans in a freshly painted car. Don't rush to get it done and finish the details later, they won't get done. I just spent 4 months straightening out a kit car someone started right and finished in a hurry. It was a mess. (windshield was held in with 4 loose #10 sheetmetal screws into fiberglass)
If you are going to disassemble the motor, get a big box of ziplock bags and a Sharpie for the bolts and nuts and small parts.
Make a head board. This is a scrap of 2x4 with 8 nails and 8 holes numbered 1 exaust 1 intake 2 exhaust...etc. Nails are for the valve springs, holes for valves. Egg boxes work well to seperate small parts too. The plastic trays for 64 oz soda bottles are great for pistons. Take lots of pictures.
Clean the parts 1 bag at a time and put them back in the bag, or a clean bagand relabel. you can spray with some oil to prevent rust.
Most important, don't mix up any parts such as bearing caps, connecting rod caps or main caps between cylinders or between engines. They are machined in place and only work if put back where found.
Disclaimer: This is the proper way to do things...It is not necessarily the way I do it. I tend to work from a large pile of mixed nuts and bolts burried under stuff on the workbench.

But engine assembly is serious